python and hdf5 unlocking scientific data

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Python And Hdf5

Author : Andrew Collette
ISBN : 9781491945018
Genre : Computers
File Size : 51. 12 MB
Format : PDF, ePub
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Gain hands-on experience with HDF5 for storing scientific data in Python. This practical guide quickly gets you up to speed on the details, best practices, and pitfalls of using HDF5 to archive and share numerical datasets ranging in size from gigabytes to terabytes. Through real-world examples and practical exercises, you’ll explore topics such as scientific datasets, hierarchically organized groups, user-defined metadata, and interoperable files. Examples are applicable for users of both Python 2 and Python 3. If you’re familiar with the basics of Python data analysis, this is an ideal introduction to HDF5. Get set up with HDF5 tools and create your first HDF5 file Work with datasets by learning the HDF5 Dataset object Understand advanced features like dataset chunking and compression Learn how to work with HDF5’s hierarchical structure, using groups Create self-describing files by adding metadata with HDF5 attributes Take advantage of HDF5’s type system to create interoperable files Express relationships among data with references, named types, and dimension scales Discover how Python mechanisms for writing parallel code interact with HDF5

Effective Computation In Physics

Author : Anthony Scopatz
ISBN : 9781491901588
Genre : Science
File Size : 59. 1 MB
Format : PDF, Kindle
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More physicists today are taking on the role of software developer as part of their research, but software development isn’t always easy or obvious, even for physicists. This practical book teaches essential software development skills to help you automate and accomplish nearly any aspect of research in a physics-based field. Written by two PhDs in nuclear engineering, this book includes practical examples drawn from a working knowledge of physics concepts. You’ll learn how to use the Python programming language to perform everything from collecting and analyzing data to building software and publishing your results. In four parts, this book includes: Getting Started: Jump into Python, the command line, data containers, functions, flow control and logic, and classes and objects Getting It Done: Learn about regular expressions, analysis and visualization, NumPy, storing data in files and HDF5, important data structures in physics, computing in parallel, and deploying software Getting It Right: Build pipelines and software, learn to use local and remote version control, and debug and test your code Getting It Out There: Document your code, process and publish your findings, and collaborate efficiently; dive into software licenses, ownership, and copyright procedures

Ipython Interactive Computing And Visualization Cookbook Second Edition

Author : Cyrille Rossant
ISBN : 9781785881930
Genre : Computers
File Size : 55. 81 MB
Format : PDF, Mobi
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Learn to use IPython and Jupyter Notebook for your data analysis and visualization work. Key Features Leverage the Jupyter Notebook for interactive data science and visualization Become an expert in high-performance computing and visualization for data analysis and scientific modeling A comprehensive coverage of scientific computing through many hands-on, example-driven recipes with detailed, step-by-step explanations Book Description Python is one of the leading open source platforms for data science and numerical computing. IPython and the associated Jupyter Notebook offer efficient interfaces to Python for data analysis and interactive visualization, and they constitute an ideal gateway to the platform. IPython Interactive Computing and Visualization Cookbook, Second Edition contains many ready-to-use, focused recipes for high-performance scientific computing and data analysis, from the latest IPython/Jupyter features to the most advanced tricks, to help you write better and faster code. You will apply these state-of-the-art methods to various real-world examples, illustrating topics in applied mathematics, scientific modeling, and machine learning. The first part of the book covers programming techniques: code quality and reproducibility, code optimization, high-performance computing through just-in-time compilation, parallel computing, and graphics card programming. The second part tackles data science, statistics, machine learning, signal and image processing, dynamical systems, and pure and applied mathematics. What you will learn Master all features of the Jupyter Notebook Code better: write high-quality, readable, and well-tested programs; profile and optimize your code; and conduct reproducible interactive computing experiments Visualize data and create interactive plots in the Jupyter Notebook Write blazingly fast Python programs with NumPy, ctypes, Numba, Cython, OpenMP, GPU programming (CUDA), parallel IPython, Dask, and more Analyze data with Bayesian or frequentist statistics (Pandas, PyMC, and R), and learn from actual data through machine learning (scikit-learn) Gain valuable insights into signals, images, and sounds with SciPy, scikit-image, and OpenCV Simulate deterministic and stochastic dynamical systems in Python Familiarize yourself with math in Python using SymPy and Sage: algebra, analysis, logic, graphs, geometry, and probability theory Who this book is for This book is intended for anyone interested in numerical computing and data science: students, researchers, teachers, engineers, analysts, and hobbyists. A basic knowledge of Python/NumPy is recommended. Some skills in mathematics will help you understand the theory behind the computational methods.

Handbook Of Open Source Tools

Author : Sandeep Koranne
ISBN : 1441977198
Genre : Computers
File Size : 72. 17 MB
Format : PDF, ePub
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Handbook of Open Source Tools introduces a comprehensive collection of advanced open source tools useful in developing software applications. The book contains information on more than 200 open-source tools which include software construction utilities for compilers, virtual-machines, database, graphics, high-performance computing, OpenGL, geometry, algebra, graph theory , GUIs and more. Special highlights for software construction utilities and application libraries are included. Each tool is covered in the context of a real like application development setting. This unique handbook presents a comprehensive discussion of advanced tools, a valuable asset used by most application developers and programmers; includes a special focus on Mathematical Open Source Software not available in most Open Source Software books, and introduces several tools (eg ACL2, CLIPS, CUDA, and COIN) which are not known outside of select groups, but are very powerful. Handbook of Open Source Tools is designed for application developers and programmers working with Open Source Tools. Advanced-level students concentrating on Engineering, Mathematics and Computer Science will find this reference a valuable asset as well.

Python Data Analysis

Author : Armando Fandango
ISBN : 9781787127920
Genre : Computers
File Size : 62. 4 MB
Format : PDF, ePub
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Learn how to apply powerful data analysis techniques with popular open source Python modules About This Book Find, manipulate, and analyze your data using the Python 3.5 libraries Perform advanced, high-performance linear algebra and mathematical calculations with clean and efficient Python code An easy-to-follow guide with realistic examples that are frequently used in real-world data analysis projects. Who This Book Is For This book is for programmers, scientists, and engineers who have the knowledge of Python and know the basics of data science. It is for those who wish to learn different data analysis methods using Python 3.5 and its libraries. This book contains all the basic ingredients you need to become an expert data analyst. What You Will Learn Install open source Python modules such NumPy, SciPy, Pandas, stasmodels, scikit-learn,theano, keras, and tensorflow on various platforms Prepare and clean your data, and use it for exploratory analysis Manipulate your data with Pandas Retrieve and store your data from RDBMS, NoSQL, and distributed filesystems such as HDFS and HDF5 Visualize your data with open source libraries such as matplotlib, bokeh, and plotly Learn about various machine learning methods such as supervised, unsupervised, probabilistic, and Bayesian Understand signal processing and time series data analysis Get to grips with graph processing and social network analysis In Detail Data analysis techniques generate useful insights from small and large volumes of data. Python, with its strong set of libraries, has become a popular platform to conduct various data analysis and predictive modeling tasks. With this book, you will learn how to process and manipulate data with Python for complex analysis and modeling. We learn data manipulations such as aggregating, concatenating, appending, cleaning, and handling missing values, with NumPy and Pandas. The book covers how to store and retrieve data from various data sources such as SQL and NoSQL, CSV fies, and HDF5. We learn how to visualize data using visualization libraries, along with advanced topics such as signal processing, time series, textual data analysis, machine learning, and social media analysis. The book covers a plethora of Python modules, such as matplotlib, statsmodels, scikit-learn, and NLTK. It also covers using Python with external environments such as R, Fortran, C/C++, and Boost libraries. Style and approach The book takes a very comprehensive approach to enhance your understanding of data analysis. Sufficient real-world examples and use cases are included in the book to help you grasp the concepts quickly and apply them easily in your day-to-day work. Packed with clear, easy to follow examples, this book will turn you into an ace data analyst in no time.

Effective Computation In Physics

Author : Anthony Scopatz
ISBN : 9781491901588
Genre : Science
File Size : 32. 83 MB
Format : PDF
Download : 830
Read : 669

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More physicists today are taking on the role of software developer as part of their research, but software development isn’t always easy or obvious, even for physicists. This practical book teaches essential software development skills to help you automate and accomplish nearly any aspect of research in a physics-based field. Written by two PhDs in nuclear engineering, this book includes practical examples drawn from a working knowledge of physics concepts. You’ll learn how to use the Python programming language to perform everything from collecting and analyzing data to building software and publishing your results. In four parts, this book includes: Getting Started: Jump into Python, the command line, data containers, functions, flow control and logic, and classes and objects Getting It Done: Learn about regular expressions, analysis and visualization, NumPy, storing data in files and HDF5, important data structures in physics, computing in parallel, and deploying software Getting It Right: Build pipelines and software, learn to use local and remote version control, and debug and test your code Getting It Out There: Document your code, process and publish your findings, and collaborate efficiently; dive into software licenses, ownership, and copyright procedures

Introduction To Deep Learning Business Applications For Developers

Author : Armando Vieira
ISBN : 9781484234532
Genre : Computers
File Size : 63. 24 MB
Format : PDF, ePub, Mobi
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Discover the potential applications, challenges, and opportunities of deep learning from a business perspective with technical examples. These applications include image recognition, segmentation and annotation, video processing and annotation, voice recognition, intelligent personal assistants, automated translation, and autonomous vehicles. An Introduction to Deep Learning Business Applications for Developers covers some common DL algorithms such as content-based recommendation algorithms and natural language processing. You’ll explore examples, such as video prediction with fully convolutional neural networks (FCNN) and residual neural networks (ResNets). You will also see applications of DL for controlling robotics, exploring the DeepQ learning algorithm with Monte Carlo Tree search (used to beat humans in the game of Go), and modeling for financial risk assessment. There will also be mention of the powerful set of algorithms called Generative Adversarial Neural networks (GANs) that can be applied for image colorization, image completion, and style transfer. After reading this book you will have an overview of the exciting field of deep neural networks and an understanding of most of the major applications of deep learning. The book contains some coding examples, tricks, and insights on how to train deep learning models using the Keras framework. What You Will Learn Find out about deep learning and why it is so powerful Work with the major algorithms available to train deep learning models See the major breakthroughs in terms of applications of deep learning Run simple examples with a selection of deep learning libraries Discover the areas of impact of deep learning in business Who This Book Is For Data scientists, entrepreneurs, and business developers.

Scientific Computing With Scala

Author : Vytautas Jancauskas
ISBN : 9781785887475
Genre : Computers
File Size : 23. 90 MB
Format : PDF, ePub
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Learn to solve scientific computing problems using Scala and its numerical computing, data processing, concurrency, and plotting libraries About This Book Parallelize your numerical computing code using convenient and safe techniques. Accomplish common high-performance, scientific computing goals in Scala. Learn about data visualization and how to create high-quality scientific plots in Scala Who This Book Is For Scientists and engineers who would like to use Scala for their scientific and numerical computing needs. A basic familiarity with undergraduate level mathematics and statistics is expected but not strictly required. A basic knowledge of Scala is required as well as the ability to write simple Scala programs. However, complicated programming concepts are not used in the book. Anyone who wants to explore using Scala for writing scientific or engineering software will benefit from the book. What You Will Learn Write and read a variety of popular file formats used to store scientific data Use Breeze for linear algebra, optimization, and digital signal processing Gain insight into Saddle for data analysis Use ScalaLab for interactive computing Quickly and conveniently write safe parallel applications using Scala's parallel collections Implement and deploy concurrent programs using the Akka framework Use the Wisp plotting library to produce scientific plots Visualize multivariate data using various visualization techniques In Detail Scala is a statically typed, Java Virtual Machine (JVM)-based language with strong support for functional programming. There exist libraries for Scala that cover a range of common scientific computing tasks – from linear algebra and numerical algorithms to convenient and safe parallelization to powerful plotting facilities. Learning to use these to perform common scientific tasks will allow you to write programs that are both fast and easy to write and maintain. We will start by discussing the advantages of using Scala over other scientific computing platforms. You will discover Scala packages that provide the functionality you have come to expect when writing scientific software. We will explore using Scala's Breeze library for linear algebra, optimization, and signal processing. We will then proceed to the Saddle library for data analysis. If you have experience in R or with Python's popular pandas library you will learn how to translate those skills to Saddle. If you are new to data analysis, you will learn basic concepts of Saddle as well. Well will explore the numerical computing environment called ScalaLab. It comes bundled with a lot of scientific software readily available. We will use it for interactive computing, data analysis, and visualization. In the following chapters, we will explore using Scala's powerful parallel collections for safe and convenient parallel programming. Topics such as the Akka concurrency framework will be covered. Finally, you will learn about multivariate data visualization and how to produce professional-looking plots in Scala easily. After reading the book, you should have more than enough information on how to start using Scala as your scientific computing platform Style and approach Examples are provided on how to use Scala to do basic numerical and scientific computing tasks. All the concepts are illustrated with more involved examples in each chapter. The goal of the book is to allow you to translate existing experience in scientific computing to Scala.

Getting Started With Rstudio

Author : John Verzani
ISBN : 9781449317072
Genre : Computers
File Size : 65. 26 MB
Format : PDF, ePub, Docs
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Dive into the RStudio Integrated Development Environment (IDE) for using and programming R, the popular open source software for statistical computing and graphics. This concise book provides new and experienced users with an overview of RStudio, as well as hands-on instructions for analyzing data, generating reports, and developing R software packages. The open source RStudio IDE brings many powerful coding tools together into an intuitive, easy-to-learn interface. With this guide, you’ll learn how to use its main components—including the console, source code editor, and data viewer—through descriptions and case studies. Getting Started with RStudio serves as both a reference and introduction to this unique IDE. Use RStudio to provide enhanced support for interactive R sessions Clean and format raw data quickly with several RStudio components Edit R commands with RStudio’s code editor, and combine them into functions Easily locate and use more than 3,000 add-on packages in R’s CRAN service Develop and document your own R packages with the code editor and related components Create one-click PDF reports in RStudio with a mix of text and R output

Earth Observation Open Science And Innovation

Author : Pierre-Philippe Mathieu
ISBN : 9783319656335
Genre : Science
File Size : 76. 60 MB
Format : PDF, Mobi
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This book is published open access under a CC BY 4.0 license. Over the past decades, rapid developments in digital and sensing technologies, such as the Cloud, Web and Internet of Things, have dramatically changed the way we live and work. The digital transformation is revolutionizing our ability to monitor our planet and transforming the way we access, process and exploit Earth Observation data from satellites. This book reviews these megatrends and their implications for the Earth Observation community as well as the wider data economy. It provides insight into new paradigms of Open Science and Innovation applied to space data, which are characterized by openness, access to large volume of complex data, wide availability of new community tools, new techniques for big data analytics such as Artificial Intelligence, unprecedented level of computing power, and new types of collaboration among researchers, innovators, entrepreneurs and citizen scientists. In addition, this book aims to provide readers with some reflections on the future of Earth Observation, highlighting through a series of use cases not just the new opportunities created by the New Space revolution, but also the new challenges that must be addressed in order to make the most of the large volume of complex and diverse data delivered by the new generation of satellites.

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