bioinformatics programming using python practical programming for biological data

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Bioinformatics Programming Using Python

Author : Mitchell L Model
ISBN : 1449382908
Genre : Computers
File Size : 42. 68 MB
Format : PDF, ePub, Docs
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Powerful, flexible, and easy to use, Python is an ideal language for building software tools and applications for life science research and development. This unique book shows you how to program with Python, using code examples taken directly from bioinformatics. In a short time, you'll be using sophisticated techniques and Python modules that are particularly effective for bioinformatics programming. Bioinformatics Programming Using Python is perfect for anyone involved with bioinformatics -- researchers, support staff, students, and software developers interested in writing bioinformatics applications. You'll find it useful whether you already use Python, write code in another language, or have no programming experience at all. It's an excellent self-instruction tool, as well as a handy reference when facing the challenges of real-life programming tasks. Become familiar with Python's fundamentals, including ways to develop simple applications Learn how to use Python modules for pattern matching, structured text processing, online data retrieval, and database access Discover generalized patterns that cover a large proportion of how Python code is used in bioinformatics Learn how to apply the principles and techniques of object-oriented programming Benefit from the "tips and traps" section in each chapter

Bioinformatics Programming Using Python

Author : Mitchell Model
ISBN : 9780596154509
Genre : Computers
File Size : 72. 94 MB
Format : PDF, Docs
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Bioinformatics -- applying information technology to the molecular biology field -- will be extremely hot in the coming years, and this book helps simplify the process. With this book, biologists will learn how to use basic scripting to simplify their computational tasks, and how to write more substantial programs. It will also help programmers who want to learn more about bioinformatics programming. This book includes lots of examples and exercises.

Bioinformatics Algorithms

Author : Miguel Rocha
ISBN : 9780128125212
Genre : Technology & Engineering
File Size : 44. 78 MB
Format : PDF, Kindle
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Bioinformatics Algorithms: Design and Implementation in Python provides a comprehensive book on many of the most important bioinformatics problems, putting forward the best algorithms and showing how to implement them. The book focuses on the use of the Python programming language and its algorithms, which is quickly becoming the most popular language in the bioinformatics field. Readers will find the tools they need to improve their knowledge and skills with regard to algorithm development and implementation, and will also uncover prototypes of bioinformatics applications that demonstrate the main principles underlying real world applications. Presents an ideal text for bioinformatics students with little to no knowledge of computer programming Based on over 12 years of pedagogical materials used by the authors in their own classrooms Features a companion website with downloadable codes and runnable examples (such as using Jupyter Notebooks) and exercises relating to the book

Angewandte Bioinformatik

Author : Paul M. Selzer
ISBN : 9783662541357
Genre : Science
File Size : 45. 24 MB
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Für Studierende und Wissenschaftler der Lebenswissenschaften schafft dieses Buch einen schnellen, strukturierten Zugang zur Angewandten Bioinformatik ohne Programmierkenntnisse oder tiefgehende Informatikkenntnisse vorauszusetzen. Es bietet eine Einführung in die tägliche Anwendung der vielfältigen bioinformatischen Werkzeuge und gibt einen ersten Überblick über das sehr komplexe Fachgebiet. Die Kontrolle des vermittelten Stoffs wird durch Übungsbeispiele mit Lösungen gewährleistet. Ein Glossar der zugrundeliegenden Fachtermini sowie ein ausführliches Sachverzeichnis runden das Buch ab. Für die 2. Auflage wurde das Werk umfassend aktualisiert.

Das Beste An Html Css

Author : Ben Henick
ISBN : 9783897216174
Genre :
File Size : 62. 5 MB
Format : PDF
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HTML und CSS bilden seit mehr als zehn Jahren das Herzstuck des Webdesigns, aber trotz oder gerade wegen ihres stolzen Alters beinhalten diese Technologien auch einige uberholungsbedurftige Features. Autor Ben Henick nimmt in diesem Buch die beiden grundlegenden Webtechnologien unter die Lupe und stellt einen nutzlichen Katalog an Webdesign-Best Practices zusammen. Er richtet sich an Webdesigner und -autoren, die grundsatzlich mit CSS und HTML vertraut sind und die nun ihren Arbeitsstil und ihren Code verbessern wollen. Sauberer Code, bessere Wartbarkeit Den Einstieg bildet ein knapper Uberblick uber die wichtigsten Aspekte von HTML und CSS, denen Sie als Webdesigner immer wieder begegnen. Beantwortet werden Fragen wie: HTML 4.01, XHTML oder HTML 5 - welche HTML-Version ist die richtige fur mein Webprojekt? Wie bekomme ich eine saubere Trennung von Inhalt und Prasentation in der Praxis hin? Gibt es Kniffe, die meinen Code sauberer und besser wartbar machen? HTML- und CSS-Best Practices Anhand klassischer Themen des Webdesigns wird Ihnen vermittelt, wie Sie beispielsweise Farben und Schriften, Bilder und Formulare so einsetzen, dass moglichst wenig Reibungsverluste im Hinblick auf verschiedene Browser und Ausgabegerate entstehen. Webstandards, Usability und Barrierefreiheit Viele Webdesigner kennen die Empfehlungen des W3C zu den Webstandards, schrecken aber vor ihrer Umsetzung zuruck. Ben Henick ist ein Verfechter des pragmatischen Mittelwegs und zeigt, wie Sie dem Geist der Webstandards gerecht werden, ohne sich in der buchstabengetreuen Umsetzung zu verheddern. Mit vertretbarem Aufwand konnen Sie so die Usability und die Zuganglichkeit Ihrer Websites deutlich verbessern.

Bioinformatics Data Skills

Author : Vince Buffalo
ISBN : 9781449367510
Genre : Computers
File Size : 35. 84 MB
Format : PDF, ePub
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Learn the data skills necessary for turning large sequencing datasets into reproducible and robust biological findings. With this practical guide, you’ll learn how to use freely available open source tools to extract meaning from large complex biological data sets. At no other point in human history has our ability to understand life’s complexities been so dependent on our skills to work with and analyze data. This intermediate-level book teaches the general computational and data skills you need to analyze biological data. If you have experience with a scripting language like Python, you’re ready to get started. Go from handling small problems with messy scripts to tackling large problems with clever methods and tools Process bioinformatics data with powerful Unix pipelines and data tools Learn how to use exploratory data analysis techniques in the R language Use efficient methods to work with genomic range data and range operations Work with common genomics data file formats like FASTA, FASTQ, SAM, and BAM Manage your bioinformatics project with the Git version control system Tackle tedious data processing tasks with with Bash scripts and Makefiles

Bioinformatics Programming In Python

Author : Ruediger-Marcus Flaig
ISBN : 3527320946
Genre : Medical
File Size : 68. 32 MB
Format : PDF, Docs
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This first introductory book designed to train novice programmers is based on a student course taught by the author, and has been optimized for biology students without previous experience in programming. By interspersing theory chapters with numerous small and large programming exercises, the author quickly shows readers how to do their own programming, and throughout uses anecdotes and real–life examples from the biosciences to ′spice up′ the text. This practical book thus teaches essential programming skills for life scientists who want –– or need –– to write their own bioinformatics software tools.

Foundations Of Theoretical Approaches In Systems Biology

Author : Alberto Marin-Sanguino
ISBN : 9782889456833
Genre :
File Size : 56. 81 MB
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If biology in the 20th century was characterized by an explosion of new technologies and experimental methods, that of the 21st has seen an equally exuberant proliferation of mathematical and computational methods that attempt to systematize and explain the abundance of available data. As we live through the consolidation of a new paradigm where experimental data goes hand in hand with computational analysis, we contemplate the challenge of fusing these two aspects of the new biology into a consistent theoretical framework. Whether systems biology will survive as a field or be washed away by the tides of future fads will ultimately depend on its success to achieve this type of synthesis. The famous quote attributed to Kurt Lewin comes to mind: "there is nothing more practical than a good theory". This book presents a wide assortment of articles on systems biology in an attempt to capture the variety of current methods in systems biology and show how they can help to find answers to the challenges of modern biology.

Einf Hrung In Perl

Author : Randal L. Schwartz
ISBN : 9783868991451
Genre : Electronic books
File Size : 24. 83 MB
Format : PDF, Mobi
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Perl ist eine Skriptsprache zur einfachen Bearbeitung von Texten, Dateien und Prozessen. Ursprunglich ein beliebtes Werkzeug von Unix-Systemadministratoren fur die zahllosen alltaglichen Aufgaben hat sich Perl zu einer ausgewachsenen Programmiersprache fur nahezu jede Rechnerplattform entwickelt und wird fur Web- und Datenbank-Programmierung, XML-Verarbeitung, Systemadministration und vieles mehr eingesetzt. Das Schweizer Messer der Programmiersprachen Gleichzeitig ist Perl immer noch das Schweizer Messer fur die kleinen alltaglichen Aufgaben. Perl ist schnell, macht Spa und erweist sich als auerordentlich nutzlich. Viele haben Perl gelernt, weil sie mussten, und benutzen es weiter, weil sie es lieben. Fur Einsteiger Einfuhrung in Perl ist ein sorgfaltig abgestimmter Kurs fur Einsteiger von drei der erfahrensten Perl-Dozenten. Mit vielen Programmierbeispielen sowie Ubungen und ausgearbeiteten Losungen zu jedem Thema zeigen die Autoren Schritt fur Schritt, wie man mit Perl, Version 5.14, programmiert. Ideal fur Systemadministoren und Programmierer Einfuhrung in Perl ist das ideale Buch fur Systemadministratoren und Programmierer, die schon nach kurzer Zeit einsetzbare Perl-Skripten schreiben wollen.

Advanced Python For Biologists

Author : Martin O. Jones
ISBN : 1495244377
Genre : Computers
File Size : 85. 13 MB
Format : PDF, Mobi
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Advanced Python for Biologists is a programming course for workers in biology and bioinformatics who want to develop their programming skills. It starts with the basic Python knowledge outlined in Python for Biologists and introduces advanced Python tools and techniques with biological examples. You'll learn: - How to use object-oriented programming to model biological entities - How to write more robust code and programs by using Python's exception system - How to test your code using the unit testing framework - How to transform data using Python's comprehensions - How to write flexible functions and applications using functional programming - How to use Python's iteration framework to extend your own object and functions Advanced Python for Biologists is written with an emphasis on practical problem-solving and uses everyday biological examples throughout. Each section contains exercises along with solutions and detailed discussion.

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